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Creators/Authors contains: "Zeng, Yimeng"

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  1. Analytics database workloads often contain queries that are executed repeatedly. Existing optimization techniques generally prioritize keeping optimization cost low, normally well below the time it takes to execute a single instance of a query. If a given query is going to be executed thousands of times, could it be worth investing significantly more optimization time? In contrast to traditional online query optimizers, we propose an offline query optimizer that searches a wide variety of plans and incorporates query execution as a primitive. Our offline query optimizer combines variational auto-encoders with Bayesian optimization to find optimized plans for a given query. We compare our technique to the optimal plans possible with PostgreSQL and recent RL-based systems over several datasets, and show that our technique finds faster query plans. 
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    Free, publicly-accessible full text available June 17, 2026
  2. Free, publicly-accessible full text available December 9, 2025
  3. In therapeutic antibody design, achieving a balance between optimizing binding affinity subject to multiple constraints, and sequence diversity within a batch for experimental validation presents an important challenge. Contemporary methods often fall short in simultaneously optimizing these attributes, leading to ineffi- ciencies in experimental exploration and validation. In this work, we tackle this problem using the latest developments in constrained latent space Bayesian op- timization. Our methodology leverages a deep generative model to navigate the discrete space of potential antibody sequences, facilitating the selection of diverse, high-potential candidates for synthesis. We also propose a novel way of training VAEs that leads to a lower dimensional latent space and achieves excellent per- formance under the data-constrained setting. We validate our approach in vitro by synthesizing optimized antibodies, demonstrating consistently high binding affini- ties and preserved thermal stability. 
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